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First q-bio Conference: Poster Presentations

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If your accepted poster is missing from this page, or if there is a problem with its listing, please let us know. You can get your poster number from this page on or after Aug 1, 2007 (the numbers will be fluid before then). See also First q-bio Conference: Poster information for details of the poster and poster sessions formats.

Notice that the poster presenters are expected to be at their posters 20:15-22:00 on the day of their presentation.

Poster Session 1: Thursday, Aug 9

  1. Edda Schulz (Humboldt U), Switching gene-regulatory loops in Th1 differentiation, PDF
  2. Birgit Schoeberl (Merrimack), Applications of sensitivity analysis for drug discovery and development in the ErbB network, PDF
  3. Bibhash Mukhopadhyay (Rice), Mathematical analysis of PAR protein dynamics, PDF
  4. Jayajit Das (MIT), RasGRP-dependent feedback regulation of Sos contributes to digital ERK responses and efficient lymphocyte activation, PDF
  5. Paul Loriaux (UCSD), A Mathematical Model of Homeostatic Regulation of JNK by NF-kB in Response to TNF Stimulation, PDF
  6. Ambarish Nag (LANL), Effects of Valence Switching on GRB2 and SOS-1 mediated Oligomerization of LAT: Theory and Simulation, PDF
  7. Gerard Ostheimer, How Cells Decide Between Apoptosis and Survival in Response to DNA Damage, PDF
  8. David Thorsley and Eric Klavins (U Washington), Non-equilibrium Analysis of Stochasticity Biochemical Reaction Networks, PDF
  9. Ah-Ram Kim (Stony Brook), Systems biology analysis of the cis-regulatory control of the expression of Drosophila evenskipped stripes 2 and 3, PDF
  10. Wenzhe Ma (UCSF), Robustness and modular design of the Drosophila segment polarity network, PDF
  11. Maciej Dobrzyński (CWI), Noise propagation in the detailed model of glnALG operon in E. coli, PDF
  12. Alexandre Ferreira Ramos (U Sao Paolo), Symmetry and stochastic gene regulation, PDF
  13. Jin Wang (Stony Brook), Energy Landscape and Robustness of Cellular Networks, PDF
  14. Luca Mariani (Humboldt U), Stochastic model for IL-4 expression dynamics, PDF (moved to Friday)
  15. Srividya Iyer-Biswas (Ohio State U), Making the right ‘noise’: bimodality, power-laws and transcriptional pulsing, PDF
  16. Edward C. Stites (U Virginia), Activating Ras Mutations in vitro and in Cancer, PDF
  17. Michael Monine, Rule based stochastic model of aggregate formation in systems of multivalent biomolecules, PDF
  18. Marc Birtwistle (U Delaware), Probabilistic Modeling & Analysis of Switch-Like Signal Transduction Systems, PDF
  19. Katja Wegner (U Hertfordshire), Evolving genetic regulatory networks, PDF
  20. Jordan Atlas, A Minimal Cell Model that Incorporates Genetic Regulation, PDF
  21. Kai-Yeung Lau (UCSF), Function constrains network architecture and dynamics: a case study on the yeast cell cycle Boolean network, PDF
  22. Juan F. Poyatos (Spanish National Cancer Centre), The Modular Architecture of Cellular Decision Making, PDF
  23. Oleg Igoshin (Rice), Graded and hysteretic responses in bacterial signaling networks: mechanisms and design principles, PDF (moved to Friday)
  24. Gabor Balazsi (UT M. D. Anderson Cancer Center), Promoter-Based Engineering of Noisy Gene Expression, PDF
  25. Matthew Bennett (UCSD), Metabolic gene regulation in a dynamically changing environment, PDF
  26. Tamar Danon (Weizmann), Dynamics Proteomics Using Fluorescent Labeled Protein Library in Living Human Cells, PDF
  27. David Noren (Johns Hopkins U), Quantitative assessment of endothelial cell response to spatial gradients of VEGF, PDF
  28. Gene-Wei Li, Probing Transcription Factor Dynamics at the Single Molecule Level in a Living Cell, PDF
  29. Adam Halasz (U Penn), Stringent Response and Persistence in E.coli, PDF
  30. Tao Long (Princeton), Study of Signal Processing in Quorum Sensing at Single-Cell Level, PDF
  31. Yang Yang (Indiana U), Near-Perfect Adaptation in the E. coli Chemotaxis Signal Transduction Network, PDF
  32. Jonathan Miller (BCM), Scaling of Sequence: Impact of Interactome? PDF
  33. Peter Hraber (LANL), HLA and HIV Infection Progression: Application of the Minimum Description Length Principle to Statistical Genetics, PDF
  34. Michael Wall (LANL), Mechanisms of Positive Regulation in the mar/sox/rob Regulon of Escherichia coli, PDF
  35. German Enciso (Ohio State U), The Effect of Transcriptional Delays in Cyclic Biochemical Networks, PDF (withdrawn)
  36. Diane Longo (UC San Diego), Modeling the Oscillatory Response of the NF-κB Signaling Pathway, PDF
  37. Michael Blinov (U Conn Health Center), Modeling using BioPax standard, PDF
  38. Clare Yu (UC Irvine), The Transportation System Inside a Living Cell, PDF
  39. Xiaohua Xu (VPI), Modeling of proteins sub-cellular localization in E. coli, PDF
  40. Fangping Mu (LANL), Transcription factor binding sites discovery by structural and molecular interaction features, PDF
  41. Anthony Almudevar (U Rochester), Graphical Selection of Perturbation Thresholds, PDF
  42. Marko Djordjevic (Ohio State U), Quantitative modeling of a restriction-modification gene switch in bacteria, PDF
  43. Christian Forst (LANL), Dynamics of the M. tuberculosis SOS Response, PDF

Poster Session 2: Friday, Aug 10

  1. Yi Zhang (PNNL), Quantitative Analysis of HER2 Overexpression Effect on EGF Receptor Signaling, PDF
  2. Paul Thomas (St. Jude's Children Hospital), A predictive model of immunodominance hierarchies in influenza infection, PDF
  3. Orna Resnekov (MSI), Functional phosphoproteome analysis of yeast pheromone response system reveals loci of feedforward and feedback control, PDF
  4. Bin Hu (UNM), Modeling the Hsp70-mediated Protein Folding in E.coli, PDF
  5. Richard Yu (MSI), Feedback regulates information transmission in a GPCR-MAPK signaling system, PDF
  6. Dorothea Busse (Humboldt U), T cell fate decision through competition for IL-2, PDF
  7. Heather Hardway (Rice), Marking the Midpoint: Models for Robust Protein Gradients in the Drosophila Embryo, PDF
  8. Yoram Burak (KITP/UCSB), Fly Magnetism: Planar cell polarity in the wing, PDF
  9. Tomas Mazel (UNM), Using detailed cellular morphology in modeling, PDF
  10. Jun Zhang (UNM), Markov Random Field Modeling of the Spatial Distribution of Proteins on Cell Membranes, PDF
  11. Genie Hsieh, Modeling Cell Signaling Pathways with Spatially Explicit Mobile Agents, PDF
  12. Marek Kimmel, Stochastic Modeling of mRNA Bursts: The Example of ER-mediated Transcription, PDF
  13. Elizabeth Jones (BCM), Stochastic Regulation of Estrogen Receptor Mediated Transcription, PDF
  14. Leor Weinberger (Princeton), Viral Genetic Circuits: How Noisy Transcriptional Feedback Controls Latency in HIV & Herpes, PDF (withdrawn)
  15. Brian Munsky (UCSB), Finite State Projection Solutions to the CME Arising in Gene Regulatory Networks, PDF
  16. Slaven Peles and Mustafa Khammash (UCSB), Studying intracellular processes using a Markov chain truncation method, PDF
  17. Juan Pedraza (Harvard), The coarse-graining of biochemical fluctuations, PDF
  18. Nikolai Sinitsyn (LANL), Coarse-graining biochemical reactions
  19. Kunihiko Kaneko (Tokyo U), Evolution of Robustness to Noise and Mutation in Phenotypic Dynamics, PDF
  20. Eiichiro Hoshino (U Tokyo), Spontaneous Adaptation of a Cell by Time Scale Interference, PDF
  21. Chris Wiggins (Columbia), Form, Function, and Information Processing in Small Stochastic Biological Networks, PDF
  22. Chikara Furusawa (Osaka U), A generic mechanism for adaptive growth rate regulation by noise, PDF
  23. Ala Trusina, Functional alignment of Regulatory Netowrks: A study of temperate phages, PDF
  24. Elizabeth Clarke (UCSF), Combinatorial Sensing in E. coli, PDF
  25. Diane Lidke (UNM), Live Cell Imaging Methods to Quantify Signaling Molecule Dynamics, PDF
  26. Keith Lidke (UNM), Fluorescence Intermittency Based Localization Microscopy for Nano-scale Imaging, PDF
  27. Daniel Kiviet (AMOLF), Optimality in a Single Cell, PDF
  28. Alex Sigal (Caltech), Variability dynamics of protein levels in human cells, PDF
  29. Carl Franck (Cornell), Exploration of Cell Assisted Cell Growth, PDF
  30. Theodore Perkins (McGill), Computation in Transcriptional Regulatory Networks, PDF
  31. Chris Myers (Cornell), The structure and evolution of sequence niches in cellular regulation and signaling, PDF
  32. Jaewook Joo (Sandia NL), Roles of two coupled negative feedback loops on dynamic patterns of NF- B signaling, PDF
  33. Akihiko Nakajima (Tokyo U), Emergence of mosaic and regulative developmental mode by a gene regulatory network model with interacting cells, PDF.
  34. Michael Caplan, Effect of Substrate Composition and Compliance on Endothelial Expression of ICAM-1 and E-Selectin, PDF
  35. Tal Danino (UCSD), Modeling the pattern formation of vascular mesenchymal cells in three dimensions, PDF
  36. Carolyn Talcott, An Egf Signaling RoadMap in Pathway Logic, PDF
  37. Elebeoba May, BioXyce: An Engineering Platform for the Study of Cellular Systems, PDF
  38. Thomas Shimizu (Harvard), Sensitivity, feedback and fluctuations in bacterial chemotaxis, PDF (talk only)
  39. Yang Cao (Virginia Tech), Stochastic Modeling and Simulation of Chemotaxis Signaling Network, PDF
  40. Anton Zilman (LANL), Physical theory of nucleo-cytoplasmic transport, PDF
  41. Marko Djordjevic (Ohio State U), Open Complex Formation by Bacterial RNA Polymerase - a Quantitative Model, PDF
  42. Fumiaki Katagiri (U Minnesota), Inference of the Plant Defense Signaling Network Based on Expression Profiles of Arabidopsis Mutants, PDF
  43. Patrick Dixon (Oxford U), Deriving Network Structure from Discrete Data, PDF
  44. John E. Pearson (Los Alamos National Laboratory), Using independent open-to-closed transitions to simplify aggregated Markov models of ion channel gating kinetics, PDF
  45. Luca Mariani (Humboldt U), Stochastic model for IL-4 expression dynamics, PDF
  46. Oleg Igoshin (Rice), Graded and hysteretic responses in bacterial signaling networks: mechanisms and design principles, PDF
  47. Celine Kuttler (The Microsoft Research - Univ Trento Centre for Computational & Systems Biology), Dynamic models of bacterial gene regulation in the SpiCO language, PDF
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