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First q-bio Summer School: Signal Transduction Mechanisms

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This series of lectures will focus on modeling the kinetics of protein-protein interactions.

Lecture 1

Scope
An Introduction to Cell Signaling
Lecturer
Byron Goldstein
Abstract
Cell signaling is initiated when receptors, that are mobile on the surface of a cell, bind external ligands and transmit the knowledge of these binding events across the plasma membrane. We review some of the general properties of receptors and membranes that are important to our understanding of how cell signaling starts. We then look at some examples to illustrate how signaling is initiated and how it proceeds. Finally, we discuss the idea of kinetic proofreading in cell signaling and how false signals are prevented from propagating and triggering a response.
References
Goldstein, B., J.R. Faeder and W. S. Hlavacek (2004). Mathematical and computational models of immune-receptor signaling. Nature Rev. Immunol. 4, 445-456.
Hlavacek, W. S., J. R. Faeder, M. L. Blinov, A. S. Perelson and B. Goldstein (2003). The complexity of complexes in signal transduction. Biotech. and Bioeng. 84, 783-794.
McKeithan, T. W. (1995). Kinetic proofreading in T-cell receptor signal transduction. Proc. Natl. Acad. Sci. USA 92, 5042-5046.
Lecture notes
PDF

Lecture 2

Scope
Rule-based modeling and software tools
Lecturer
James R. Faeder
Materials
PDF slides (1.4 Mb)
Bibliography and Links
Additional Contacts
Bill Hlavacek
Ambarish Nag

Lecture 3

Scope
Calcium signaling
Lecturer
Bridget Wilson, University of New Mexico Cancer Center
Materials
PDF Lecture notes

Lecture 4

Scope
Spatial effects in signaling
Lecturer
Jeremy S. Edwards
Materials
Lecture notes
Relevant websites
References

Lecture 5

Scope
Structural biology of signaling proteins
Lecturer
Chang-Shung Tung
Materials
PDF Lecture notes

Lecture 6

Scope
Signaling in bacterial chemotaxis
Lecturer
Tom Shimizu, Harvard University
Materials
Lecture notes
Relevant websites
References