q-bio Summer School and Conference, 2022

3.1 – Reaction Stoichiometry and Propensity (Michael May)

Lecture 3.1

Title: Learn how to describe single-cell reaction processes in terms of the stoichiometry vectors and propensity functions

Lecturer: Michael May

Lecturer Website: https://www.engr.colostate.edu/~munsky/

Lecturer Email: michaelpmay@live.com

Learning Objectives:

      • Understand and be able to formulate the stoichiometry matrix (S) for arbitrary chemical reaction processes.
      • Understand and be able to formulate the propensity function vector (W) for arbitrary chemical reaction processes.
      • Learn how to formulate and solve ordinary differential equation models for arbitrary chemical reaction networks.

[Link to Slides]

[Link to Tutorial Notebook]