Q-bio 2015: Tutorials

Welcome to The Ninth q-bio Conference the annual conference dedicated to advancing quantitative understanding of cellular regulation

Dates: August 5-8, 2015 Place: Virginia Tech, Blacksburg, Virginia, USA Abstract Submission: closed.

Wednesday, August 5, 2015

Session 1: Tutorial Session (13:00 - 18:00, Squires Student Center, check at registration for rooms)

Session 1A - 13:00-14:30 (2 parallel sessions)

13:00-14:30 John Sekar, Robert Sheehan, and Jose Juan Tapia, University of Pittsburgh, Modeling Complex Biochemical Systems in Time and Space Using BioNetGen and MCell (location)) (slides & materials)

13:00-14:30 William Mather, Virginia Tech, COPASI for Biochemical Network Simulation

13:00-14:30 OPEN

Break - 14:30-14:45

Session 1B - 14:45-16:15 (3 parallel sessions)

14:45-16:15 Steven S. Andrews, Fred Hutchinson Cancer Research Center, Smoldyn: Spatial Cell Biology Simulation

14:45-16:15 Emek Demir, Memorial Sloan Kettering Cancer Center, Pathway Commons/BioPAX

14:45-16:15 Ilya Nemenman, Emory University, Information Theory for Cells

Break - 16:15-16:30

Session 1C - 16:30-18:00 (3 parallel sessions)

16:30-18:00 Michael Blinov, University of Connecticut Health Center, VCell: Spatial Modeling, Reactions, and Rules

16:30-18:00 Alexander L. R. Lubbock and Oscar O. Ortega, Vanderbilt University, PySB, a programming environment to generate algorithmic representations of biological systems