The Sixth q-bio Conference, Poster Session II

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Time

August 10, 2012, 20:00 - 23:00

Place

Junior and Senior Commons Rooms

Spotlights

• B1 Charles Denby, UC Berkeley, Negative feedback confers mutational robustness in yeast transcription factor regulation.
• B2 Wolfram Moebius, Harvard University, Population dynamics of bacteriophage T7 on heterogeneous Escherichia coli substrates.
• B3 Edda Schulz, Institut Curie, Disentangling the X chromosome inactivation network.
• B4 Bruno Martins, The University of Edinburgh, Ultrasensitivity in 'anti-zero-order' regimes.
• B5 Natasa Miskov-Zivanov, University of Pittsburgh, Department of Computational and Systems Biology, Model checking for studying temporal behavior in cell differentiation.
• B6 David Bruce Borenstein, Princeton University, Modeling the role of diffusion in microbial social behavior.
• B7 Rosemary Braun, Northwestern University, Hearing the shape of cancer: Spectral graph theory for pathway analysis of gene expression data.
• B8 John Wikswo, Vanderbilt University, Scaling and systems biology for integrating multiple organs-on-a-chip.

Posters

• B9 Rhys Adams, The University of Texas MD Anderson Cancer Center, Estimated noise-driven phenotypic switching rates depend on cell division rates.
• B10 Roberto Alvarez-Martinez, Universidad Nacional Autonoma de Mexico (UNAM), RNA viruses evolution with frequency-dependent fitness.
• B11 Susan Atlas, University of New Mexico, Sequence-based pattern recognition and structure/function in zinc finger proteins.
• B12 Eli Bogart, Cornell University, A metabolic network plasticity approach to the evolution of C4 photosynthesis.
• B13 Bart Borek, Centre for Applied Mathematics in Bioscience and Medicine / McGill University, Pacemaker interactions induce reentrant wave dynamics in cardiac cell culture.
• B14 Carlos Lopez, Harvard Medical School, Exploration of apoptosis signaling mechanisms and their role in cancer biology using models as programs.
• B15 Anchal Chandra, Stanford University, Exploiting phototaxis mechanisms to engineer coordinated communities of cyanobacteria.
• B16 Daniel Chee, University of New Mexico, Graph-based meta-analysis of gene expression biclustering.
• B17 Lin Chen, UTHSC-Houston, MD Anderson Cancer Center, Growth advantage associated with robust pattern formation in expanding yeast colonies.
• B18 Lily Chylek, Cornell University, Modeling phosphorylation dynamics of the T-cell receptor signaling network.
• B19 Purushottam Dixit, Brookhaven National Lab, Protein-protein interaction networks confer stability to constituent proteins and act as evolutionary capacitors.
• B20 Jeff Drocco, Los Alamos National Laboratory, Quantitative characterization of transcriptional responses to quantum dots of different physico-chemical parameters.
• B21 Ricardo Ferreira, UFRGS, Transcriptogram as a diagnosis tool for gene expression data.
• B22 David Frigola, University of Barcelona, Dept. ECM, Fluctuations and stochastic cell switching.
• B23 Chang Gong, University of Michigan, A systems biology approach to understanding the efficiency of the lymph node in producing primed T cells.
• B24 Mani Hamidi, University of British Columbia, Sources of non-genetic variability and heritability in pheromone signaling observed on a microfluidic device.
• B25 Keira Havens, Colorado State University, Development and validation of a synthetic signaling system model.
• B26 Marta Iwanaszko, Silesian University of Technology, Prediction of the gene transcription dynamics based on the structure of regulatory sequences.
• B27 Joanna Jaruszewicz, Institute of Fundamental Technological Research, Type of noise determines cell decision.
• B28 Shridhar Jayanthi, University of Michigan, Impact of retroactivity on transcriptional components.
• B29 Jaemyeong Jung, Los Alamos National Laboratory, Time-resolved, super-resolution optical imaging of Cel7A cellulases.
• B30 Ziya Kalay, Kyoto University, iCeMS (Institute for Integrated Cell-Material Sciences), Effects of confinement on reaction kinetics in the plasma membrane.
• B31 Manos Karagiannis, Massachusetts Institute of Technology, Rational approaches to direct human embryonic stem cell differentiation.
• B32 Sargis Karapetyan, Duke University, Designing novel synthetic genetic oscillators in yeast using protein sequestration.
• B33 Bogdan Kazmierczak, Institute of Fundamental Technological Research Polish Academy of Sciences, Spatially extended model of kinase-receptor interaction.
• B34 David Klinke, West Virginia University, A quantitative systems approach to identify paracrine mechanisms that locally suppress immune response to Interleukin-12 in the B16 melanoma model.
• B35 Sarah Kolitz, Massachusetts Institute of Technology, Measuring kinase activities in single cells.
• B36 Kirill Korolev, Massachusetts Institute of Technology, Deleterious mutations in cancer progression.
• B37 Jinho Lee, UT MD Anderson Cancer Centrer, Mapping the regulatory structure between two key transcription factors in a breast cancer cell line.
• B38 Andr? Leier, Okinawa Institute of Science and Technology, Simulating diffusion in crowded environments with multifractional Brownian motion.
• B39 Biao Li, Rice University, Stochastic modeling and simulation of flow-cytometric labeling experiments reveals distribution of rates of DNA replication.
• B40 Zhiyuan Li, University of California, San Francisco, Stability and instability in gene regulatory networks.
• B41 Samanthe Lyons, Colorado State University, School of Biomedical Engineering, Modulation of a genetic toggle switch by a downstream load.
• B42 Ben Machta, Cornell University, Critical fluctuations and membrane proteins.
• B43 Marco Mauri, Max Planck Institute KG-TH, A model for sigma factor competition in bacterial cells.
• B44 Meghan McCabe, University of New Mexico, Repeated interactions between ErbB1 receptors and the impact on signal initiation.
• B45 Thembi Mdluli, Purdue University, Sparse-grid-based experimental design method to reduce system dynamics uncertainty in nonlinear biological models.
• B46 Eric Mjolsness, University of California, Irvine, Time-ordered products for stochastic systems biology.
• B47 Niketh Nair, University of Pittsburgh, Growth factor signal processing for cell proliferation control.
• B48 Ilya Nemenman, Departments of Physics and Biology, Emory University, Inference of a large empirical fitness landscape from high-throughput sequencing of the E. coli lac promoter.
• B49 Mor Nitzan, Hebrew University of Jerusalem, The selector switch: A mixed offense-defense network module in Staphylococcus aureus.
• B50 Kevin Oishi, University of Washington, Specification and simulation of multi-celled behaviors.
• B51 Libertad Pantoja-Hern?ndez, UNAM IE (Institute for Ecology), Retroactivity analysis of a memory synthetic system.
• B52 Phil Pohl, Sandia National Laboratories, A general framework for modeling growth and division of mammalian cells.
• B53 Katie Quinn, Massachusetts Institute of Technology, mRNA noise reveals that activator regulation of transcriptional bursts is biphasic.
• B54 Matt Z. Rogon, German Cancer Research Center DKFZ, Unraveling core regulatory programs in lung cancer upon treatment with gemcitabine and docetaxel.
• B55 Jeremie Roux, Harvard Medical School, Probing apoptosis dynamics at the receptor level.
• B56 Michal S. Sternberg, Bar Ilan University, The NK cell inhibitory receptor repertoire is shaped by MHC-dependent and independent effects.
• B57 Joern Schmiedel, Humboldt University Berlin, Mathematical analysis of microRNA regulation reveals crosstalk limits and increased noise in gene expression.
• B58 Gregory Schwartz, Drexel University, Measuring immune repertoire rarefaction richness and diversity by genetic sequence fragment quantification.
• B59 Volkan Sevim, UC San Francisco, Multisite phosphorylation is responsible for timing robustness of G1/S transition in yeast.
• B60 Madjid Soltani, University of Waterloo, Computational Study of Blood Flow through the Carotid Artery Bifurcation.
• B61 Ryan Suderman, University of Kansas, Ensemble Signaling in MAPK Cascades.
• B62 Chris Takahashi, University of Washington, Engineered evolvability: in vivo optimization of gene networks.
• B63 Pamela Vazquez, CINVESTAV, Normotense system response characterization: Experimental and theoretical approach.
• B64 Juan Venegas-Ortiz, University of Edinburgh, Analytical study of an exclusive genetic switch.
• B65 Xin Wang, Peking University, Integration of Cln3 determines G1 length in Saccharomyces cerevisiae.
• B66 Xujing Wang, University of Alabama at Birmingham, The role of glucose-dependent mobilization and priming of insulin granules in insulin release.
• B67 Jialiang Wu, Georgia Institute of Technology, Stochastic 3-D simulations for diffusion-controlled reactions with concentration-dependent kinetic rates in crowded environments.
• B68 Xiaojing Yang, UC San Francisco, Light-gated cyclin.